Publications

Journal Articles

  1. The Concerted Dance of EcoRV and dsDNA: Interplay Between Protein Binding Affinity and DNA Dynamics
    R. Basak, J. E. George, C. J. Tan, J. A. van Kan, V. Arluison, W. Wende, and J. R. C. van der Maarel
    Submitted (2025)

  2. Amyloid-Like DNA Bridging: A New Mode of DNA Shaping
    F. Wien, M. Gragera, T. Matsuo, G. Moroy, M. T. Bueno-Carrasco, R. Arranz, A. Cossa, A. Martel, H. N. Bordallo, S. Rudick, M. Velez, J. R. C. van der Maarel, J. Peters, and V. Arluison
    Nucleic Acids Research (2025), DOI: 10.1093/nar/gkaf169

  3. Effect of DNA Base Methylation on Binding and Mobility of Bacterial Protein Hfq on Double-Stranded DNA
    J. E. George, R. Basak, I. Yadav, C. J. Tan, J. A. van Kan, F. Wien, V. Arluison, and J. R. C. van der Maarel
    Lab on a Chip 24, 5137–5144 (2024), DOI: 10.1039/D4LC00628C

  4. Dynamical Stiffening of dsDNA Confined and Stretched in a Nanochannel
    I. Yadav, R. Basak, J. A. van Kan, and J. R. C. van der Maarel
    Europhysics Letters 148, 17002 (2024), DOI: 10.1209/0295-5075/ad7dad

  5. Form Factor of Helical Structures and Twisted Fibers
    J. R. C. van der Maarel
    Journal of Applied Crystallography 56, 1714-1720 (2023), DOI: 10.1107/S1600576723008671

  6. Reconstituted TAD-Size Chromatin Fibers Feature Heterogeneous Nucleosome Clusters
    N. Korolev, A. Zinchenko, A. Soman, Q. Chen, S. Y. Wong, N. V. Berezhnoy, R. Basak, J. R. C. van der Maarel, J. van Noort, and L. Nordenskiold
    Scientific Reports 12, 15558 (2022), DOI: 10.1038/s41598-022-19471-3

  7. Amyloid-like Hfq Interaction with Single Stranded DNA: Involvement in Recombination and Replication in Escherichia coli
    K. Kubiak, F. Wien, I. Yadav, N. C. Jones, S. V. Hoffmann, E. Le Cam, A. Cossa, F. Geinguenaud, J. R. C. van der Maarel, G. Wegrzyn, and V. Arluison
    QRB Discovery 3, e15 (2022), DOI: 10.1017/qrd.2022.15

  8. SARS-CoV-2 Spike Protein and Mouse Coronavirus Inhibit Biofilm Formation by Streptococcus Pneumoniae and Staphylococcus Aureus
    M. F. Loke, I. Yadav, T. K. Lim, J. R. C. van der Maarel, L-T Sham, and V. T. Chow
    International Journal of Molecular Sciences 23, 3291 (2022), DOI: 10.3390/ijms23063291

  9. Mobility of Bacterial Protein Hfq on dsDNA: Role of C-Terminus Mediated Transient Binding
    C. J. Tan, R. Basak, I. Yadav, J. A. van Kan, V. Arluison, and J.R.C. van der Maarel
    The Journal of Physical Chemistry B 126, 1477-1482 (2022), DOI: 10.1021/acs.jpcb.1c10234

  10. Internal Motion of Chromatin Fibers is Governed by Dynamics of Uncompressed Linker Strands
    R. Basak, W. Rosencrans, I. Yadav, P. Yan, N. V. Berezhnoy, Q. Chen, J. A. van Kan, L. Nordenskiold, A. Zinchenko, and J. R. C. van der Maarel
    Biophysical Journal 119, 2326-2334 (2020), DOI: 10.1016/j.bpj.2020.10.018

  11. Role of DNA Internal Motion on the Mobility of a Nucleoid Associated Protein
    I. Yadav, R. Basak, P. Yan, J. A. van Kan, V. Arluison, and J.R.C. van der Maarel
    The Journal of Physical Chemistry Letters 11, 8424-8429 (2020), DOI: 10.1021/acs.jpclett.0c02251

  12. Interactions between DNA and the Hfq Amyloid-Like Region Trigger a Viscoelastic Response
    O. El Hamoui, I. Yadav, M. Radiom, F. Wien, J.-F. Berret, J. R. C. van der Maarel, and V. Arluison
    Biomacromolecules 21, 3668-3677 (2020), DOI: 10.1021/acs.biomac.0c00747

  13. Intramolecular Dynamics of dsDNA Confined to a Quasi-One-Dimensional Nanochannel
    I. Yadav, W. Rosencrans, R. Basak, J. A. van Kan, and J. R.C. van der Maarel
    Physical Review Research 2, 013294 (2020), DOI: 10.1103/PhysRevResearch.2.013294

  14. Linearisation and Labelling of Single-Stranded DNA for Optical Sequence Analysis
    R. Basak, F. Liu, S. Qureshi, N. Gupta, C. Zhang, R. de Vries, J. A. van Kan, S. T. Dheen, and J. R. C. van der Maarel
    The Journal of Physical Chemistry Letters 10, 316-321 (2019), DOI: 10.1021/acs.jpclett.8b03465

  15. Effect of HU Protein on the Conformation and Compaction of DNA in a Nanochannel
    D. Guttula, F. Liu, J. A. van Kan, V. Arluison, and J. R. C. van der Maarel
    Soft Matter 14, 2322-2328 (2018), DOI: 10.1039/C7SM02118F

  16. Single-Molecule Compaction of Megabase-Long Chromatin Molecules by Multivalent Cations
    A. Zinchenko, N. V. Berezhnoy, S, Wang, W. M. Rosencrans, N. Korolev, J. R. C. van der Maarel, and L. Nordenskiold
    Nucleic Acids Research 46, 635-649 (2018), DOI: 10.1093/nar/gkx1135

  17. Compaction and Condensation of DNA Mediated by the C-terminal Domain of Hfq
    A. Malabirade, K. Jiang, K. Kubiak, A. Diaz-Mendoza, F. Liu, J. A. van Kan, J.-F. Berret, V. Arluison, and J. R. C. van der Maarel
    Nucleic Acids Research 45, 7299-7308 (2017), DOI: 10.1093/nar/gkx431

  18. Compaction of Plasmid DNA by Macromolecular Crowding
    A. N. Gupta and J. R. C. van der Maarel
    Macromolecules 50, 1666-1671 (2017), DOI: 10.1021/acs.macromol.6b02742

  19. Precise Coating of a Wide Range of DNA Templates by a Protein Polymer with a DNA Binding Domain
    A. Hernandez-Garcia, N. A. Estrich, M. W. T. Werten, J. R. C. van der Maarel, T. H. LaBean, F. A. de Wolf, M. A. Cohen Stuart, and R. de Vries
    ACS Nano 11, 144-152 (2017), DOI: 10.1021/acsnano.6b05938

  20. Separation of Superparamagnetic Particles through Ratcheted Brownian Motion and Periodically Switching Magnetic Fields
    F. Liu, L. Jiang, H. M. Tan, A. Yadav, P. Biswas, J. R. C. van der Maarel, C. A. Nijhuis, and J. A. van Kan
    Biomicrofluidics 10, 064105 (2016), DOI: 10.1063/1.4967965

  21. Structure of the H-NS-DNA Nucleoprotein Complex
    J. R. C. van der Maarel, D. Guttula, V. Arluison, S. U. Egelhaaf, I. Grillo, and V. T. Forsyth
    Soft Matter 12, 3636-3642 (2016), DOI: 10.1039/C5SM03076E

  22. Revisiting the Anomalous Bending Elasticity of Sharply Bent DNA
    P. Cong, L. Dai, H. Chen, J. R. C. van der Maarel, P. S. Doyle, and J. Yan
    Biophysical Journal 109, 2338-2351 (2015), DOI: 10.1016/j.bpj.2015.10.016

  23. Effects of Hfq on the Conformation and Compaction of DNA
    K. Jiang, C. Zhang, D. Guttula, F. Liu, J. A. van Kan, C. Lavelle, K. Kubiak, A. Malabirade, A. Lapp, V. Arluison, and J. R. C. van der Maarel
    Nucleic Acids Research 43, 4332-4341 (2015), DOI: 10.1093/nar/gkv268

  24. A Nanochannel Platform for Single DNA Studies: from Crowding, Protein DNA Interaction, to Sequencing of Genomic Information
    J. R. C. van der Maarel, C. Zhang, and J. A. van Kan
    Israel Journal of Chemistry 54, 1573-1588 (2014), DOI: 10.1002/ijch.201400091

  25. Translational and Reorientational Dynamics of Entangled DNA
    Z. Gong and J. R. C. van der Maarel
    Macromolecules 47, 7230-7237 (2014), DOI: 10.1021/ma501618a

  26. Dynamic Remodeling of Microbial Biofilms by Functionally Distinct Exopolysaccharides
    S. C. Chew, B. Kundukad, T. Seviour, J. R. C. van der Maarel, L. Yang, S. A. Rice, P. S. Doyle, and S. Kjelleberg
    mBio 5, e01536-14 (2014), DOI: 10.1128/mBio.01536-14

  27. Buried Centimeter-Long Micro- and Nanochannel Arrays in Porous Silicon and Glass
    S. Azimi, Z. Dang, C. Zhang, J. Song, M. B. H. Breese, C. H. Sow, J. A. van Kan, and J. R. C. van der Maarel
    Lab on a Chip 14, 2081-2089 (2014), DOI: 10.1039/c4lc00062e

  28. Extended de Gennes Regime of DNA Confined in a Nanochannel
    L. Dai, J. R. C. van der Maarel, and P. S. Doyle
    Macromolecules 47, 2445-2450 (2014), DOI: 10.1021/ma500326w

  29. Amplified Stretch of Bottlebrush-Coated DNA in Nanofluidic Channels
    C. Zhang, A. Hernandez-Garcia, K. Jiang, Z. Gong, D. Guttula, S.Y. Ng, P.P. Malar, J. A. van Kan, L. Dai, P.S. Doyle, R. de Vries, and J.R.C. van der Maarel
    Nucleic Acids Research 41, e189 (2013), DOI: 10.1093/nar/gkt783

  30. Effect of H-NS on the Elongation and Compaction of Single DNA Molecules in a Nanospace
    C. Zhang, D. Guttula, F. Liu, P.P. Malar, S.Y. Ng, L. Dai, P.S. Doyle, J.A. van Kan, and J.R.C. van der Maarel
    Soft Matter 9, 9593-9601 (2013), DOI: 10.1039/C3SM51214B

  31. Time-Dependent Bending Rigidity and Helical Twist of DNA by Rearrangement of Bound HU Protein
    B. Kundukad, P.W. Cong, J.R.C. van der Maarel, and P.S. Doyle
    Nucleic Acids Research 41, 8280-8288 (2013), DOI: 10.1093/nar/gkt593

  32. A Nanofluidic Device for Single Molecule Studies with In Situ Control of Environmental Solution Conditions
    C. Zhang, K. Jiang, F. Liu, P.S. Doyle, J.A. van Kan, and J.R.C. van der Maarel
    Lab on a Chip 13, 2821-2826 (2013), DOI: 10.1039/C3LC50233C

  33. Revisiting Blob Theory for DNA Diffusivity in Slitlike Confinement
    L. Dai, D.R. Tree, J.R.C. van der Maarel, K.D. Dorfman, and P.S. Doyle
    Physical Review Letters 110, 168105 (2013), DOI: 10.1103/PhysRevLett.110.168105

  34. Intrachain Dynamics of Large dsDNA Confined to Slit-Like Channels
    J.J. Jones, J.R.C. van der Maarel, and P.S. Doyle
    Physical Review Letters 110, 068101 (2013), DOI: 10.1103/PhysRevLett.110.068101

  35. Gelation of the Genome by Topoisomerase II Targeting Anticancer Agents
    Y. Kim, B. Kundukad, A. Allahverdi, L. Nordenskiold, P.S. Doyle, and J.R.C. van der Maarel
    Soft Matter 9, 1656-1663 (2013), DOI: 10.1039/C2SM27229F

  36. Bipedal Nanowalker by Pure Physical Mechanisms
    J. Cheng, S. Sreelatha, R. Hou, A. Efremov, R. Liu, J.R.C. van der Maarel, and Z. Wang
    Physical Review Letters 109, 238104 (2012), DOI: 10.1103/PhysRevLett.109.238104

  37. High Throughput Fabrication of Disposable Nanofluidic Lab-on-Chip Devices for Single Molecule Studies
    J.A. van Kan, C. Zhang, P.P. Malar, and J.R.C. van der Maarel
    Biomicrofluidics 6, 036502 (2012), DOI: 10.1063/1.4740231

  38. Conformation Model of Back-Folding and Looping of a Single DNA Molecule Confined inside a Nanochannel
    L. Dai, S.Y. Ng, P.S. Doyle, and J.R.C. van der Maarel
    ACS Macro Letters 1, 1046-1050 (2012), DOI: 10.1021/mz300323a

  39. Effect of Nanoslit Confinement on the Knotting Probability of Circular DNA
    L. Dai, J.R.C. van der Maarel, and P.S. Doyle
    ACS Macro Letters 1, 732-736 (2012), DOI: 10.1021/mz3001622

  40. MRP14 (S100A9) Protein Interacts with Alzheimer Beta-Amyloid Peptide and Induces its Fibrillization
    C. Zhang, Y. Liu, J. Gilthorpe, and J.R.C. van der Maarel
    PLoS ONE 7, e32953 (2012), DOI: 10.1371/journal.pone.0032953

  41. Nanouidic Compaction of DNA by Like-Charge Protein
    C. Zhang, Z. Gong, D. Guttula, P.P. Malar, J.A. van Kan, P.S. Doyle, and J.R.C. van der Maarel
    The Journal of Physical Chemistry B 116, 3031-3036 (2012), DOI: 10.1021/jp2124907

  42. A Single-Channel Microparticle Sieve Based on Brownian Ratchets
    S. Verleger, A. Grimm, C. Kreuter, T.H. Ming, J.A. van Kan, A. Erbe, E. Scheer, and J.R.C. van der Maarel
    Lab on a Chip 12, 1238-1241 (2012), DOI: 10.1039/C2LC21089D

  43. A Systematic Study of DNA Conformation in Slitlike Confinement
    L. Dai, J.J. Jones, J.R.C. van der Maarel, and P.S. Doyle
    Soft Matter 8, 2972-2982 (2012), DOI: 10.1039/C2SM07322F

  44. Effect of Nanochannel Geometry on DNA Structure in the Presence of Macromolecular Crowding Agent
    J.J. Jones, J.R.C. van der Maarel, and P.S. Doyle
    Nano Letters 11, 5047-5053 (2011), DOI: 10.1021/nl203114f

  45. Control of the Flow Properties of DNA by Topoisomerase II and its Targeting Inhibitor
    B. Kundukad and J.R.C. van der Maarel
    Biophysical Journal 99, 1906-1915 (2010), DOI: 10.1016/j.bpj.2010.07.013

  46. Effect of Crowding on the Conformation of Interwound DNA Strands from Neutron Scattering Measurements and Monte Carlo Simulations
    X. Zhu, S.Y. Ng, A.N. Gupta, Y.P. Feng, B. Ho, A. Lapp, S. Egelhaaf, V.T. Forsyth, M. Haertlein, M. Moulin, R. Schweins, and J.R.C. van der Maarel
    Physical Review E 81, 061905 (2010), DOI: 10.1103/PhysRevE.81.061905

  47. Macromolecular Crowding Induced Elongation and Compaction of Single DNA Molecules Confined in a Nanochannel
    C. Zhang, P.G. Shao, J.A. van Kan, and J.R.C. van der Maarel
    Proceedings of the National Academy of Sciences of the United States of America 106, 16651-16656 (2009), DOI: 10.1073/pnas.0904741106

  48. Model for a Brownian Ratchet with Improved Characteristics for Particle Separation
    A. Grimm, H. Stark, and J.R.C. van der Maarel
    Physical Review E 79, 061102 (2009), DOI: 10.1103/PhysRevE.79.061102

  49. Viscoelasticity of Entangled Lambda-Phage DNA Solutions
    X. Zhu, B. Kundukad, and J.R.C. van der Maarel
    The Journal of Chemical Physics 129, 185103 (2008), DOI: 10.1063/1.3009249

  50. Conformational Response of Supercoiled DNA to Confinement in a Nanochannel
    W. Lim, S.Y. Ng, C. Lee,Y.P. Feng, and J.R.C. van der Maarel
    The Journal of Chemical Physics 129, 165102 (2008), DOI: 10.1063/1.2992076

  51. Effects of Electrostatic Screening on the Conformation of Single DNA Molecules Confined in a Nanochannel
    C. Zhang, F. Zhang, J.A. van Kan, and J.R.C. van der Maarel
    The Journal of Chemical Physics 128, 225109 (2008), DOI: 10.1063/1.2937441

  52. Molecular Dynamics Simulation of Multivalent Ion Mediated Attraction between DNA Molecules
    L. Dai, Y. Mu, L. Nordenskiold, and J.R.C. van der Maarel
    Physical Review Letters 100, 118310 (2008), DOI: 10.1103/PhysRevLett.100.118301

  53. Surface-Directed and Ethanol-Induced DNA Condensation on Mica
    C. Zhang and J.R.C. van der Maarel
    The Journal of Physical Chemistry B 112, 3552-3557 (2008), DOI: 10.1021/jp0776560

  54. Charge Structure and Counterion Distribution in Hexagonal DNA Liquid Crystal
    L. Dai, Y. Mu, L. Nordenskiold, A. Lapp, and J.R.C. van der Maarel
    Biophysical Journal 92, 947-958 (2007), DOI: 10.1529/biophysj.106.095745

  55. Plasmid DNA Encapsulation within Cationic Diblock Copolymer Vesicles for Gene Delivery
    A.V. Korobko, C. Backendorf, and J.R.C. van der Maarel
    The Journal of Physical Chemistry B 110, 14550-14556 (2006), DOI: 10.1021/jp057363b

  56. Encapsulation of DNA by Cationic Diblock Copolymer Vesicles
    A.V. Korobko, W. Jesse, and J.R.C. van der Maarel
    Langmuir 21, 34-42 (2005), DOI:10.1021/la047967r

  57. Structure of Strongly Interacting Polyelectrolyte Diblock Copolymer Micelles
    A.V. Korobko, W. Jesse, A. Lapp, S.U. Egelhaaf, and J.R.C. van der Maarel
    The Journal of Chemical Physics 122, 024902 (2005), DOI: 10.1063/1.1829039

  58. Do Spherical Polyelectrolyte Brushes Interdigitate?
    A.V. Korobko, W. Jesse, S.U. Egelhaaf, A. Lapp, and J.R.C. van der Maarel
    Physical Review Letters 93, 177801 (2004), DOI: 10.1103/PhysRevLett.93.177801

  59. Binding of Mg2+, Cd2+, and Ni2+ to Liquid Crystalline NaDNA: Polarized Light Microscopy and NMR Investigations
    A. Catte, F. Cesare-Marincola, J.R.C. van der Maarel, G. Saba, and A. Lai
    Biomacromolecules 5, 1552-1556 (2004), DOI: 10.1021/bm049910p

  60. Ionic Transport in Polyelectrolyte Gels: Model and NMR Investigations
    M.I.M. Darwish, J.R.C. van der Maarel, and P.L.J. Zitha
    Macromolecules 37, 2307-2312 (2004), DOI: 10.1021/ma0302558

  61. Contaminant Containment Using Polymer Gel Barriers
    M.I.M. Darwish, R. K. Rowe, J.R.C. van der Maarel, L. Pel, H. Huinink, and P.L.J. Zitha
    Canadian Geotechnical Journal 41, 106-117 (2004), DOI: 10.1139/T03-072

  62. Thermal Relaxation and Coherence Dynamics of Spin 3/2. II. Strong Radio-Frequency Field
    J.R.C. van der Maarel
    Concepts in Magnetic Resonance Part A 19A, 117-133 (2003), DOI: 10.1002/cmr.a.10088

  63. Thermal Relaxation and Coherence Dynamics of Spin 3/2. I. Static and Fluctuating Quadrupolar Interactions in the Multipole Basis
    J.R.C. van der Maarel
    Concepts in Magnetic Resonance Part A 19A, 97-116 ( 2003), DOI: 10.1002/cmr.a.10087

  64. Supercoiled DNA; Plectonemic Structure and Liquid Crystal Formation
    J.R.C. van der Maarel, S.S. Zakharova, W. Jesse, C. Backendorf, S. U. Egelhaaf, and A. Lapp
    Journal of Physics: Condensed Matter 15, S183-S189 (2003), DOI: 10.1088/0953-8984/15/1/323

  65. Liquid Crystal Formation in Supercoiled DNA Solutions
    S.S. Zakharova, W. Jesse, C. Backendorf, and J.R.C. van der Maarel
    Biophysical Journal 83, 1119-1129 (2002), DOI: 10.1016/S0006-3495(02)75235-1

  66. Dimensions of Plectonemically Supercoiled DNA
    S.S. Zakharova, W. Jesse, C. Backendorf, S.U. Egelhaaf, A. Lapp, and J.R.C. van der Maarel
    Biophysical Journal 83, 1106-1118 (2002), DOI: 10.1016/S0006-3495(02)75234-X

  67. Extremely Slow Counterion Dynamics in Xanthan Liquid Crystal through 23Na and 14N NMR
    J.R.C. van der Maarel, D.E. Woessner, and M.E. Merritt
    The Journal of Physical Chemistry B 106, 3864-3871 (2002), DOI: 10.1021/jp014277c

  68. Detection of Sodium Ions in Anisotropic Environments through Spin-Lock NMR
    I. Hancu, J.R.C. van der Maarel, and F.E. Boada
    Magnetic Resonance in Medicine 47, 68-74 (2002), DOI: 10.1002/mrm.10023

  69. Nematic Ordering of Suspensions of Charged Anisotropic Colloids Detected by 23Na Nuclear Magnetic Resonance
    P. Porion, M. Al Muhktar, S. Meyer, A.M. Faugere, J.R.C. van der Maarel, and A. Delville
    The Journal of Physical Chemistry B 105, 10505-10514 (2001), DOI: 10.1021/jp0104738

  70. Dynamics of Spin I = 3/2 under Spin-Locking Conditions in an Ordered Environment
    J.R.C. van der Maarel, W. Jesse, I. Hancu, and D.E. Woessner
    Journal of Magnetic Resonance     151, 298-313 (2001), DOI: 10.1006/jmre.2001.2382

  71. A Model for the Dynamics of Spins 3/2 in Biological Media: Signal Loss during Radiofrequency Excitation in Triple-Quantum Filtered Sodium MRI
    I. Hancu, J.R.C. van der Maarel, and F.E. Boada
    Journal of Magnetic Resonance     147, 179-191 (2000), DOI: 10.1006/jmre.2000.2177

  72. Salt-Induced Contraction of Polyelectrolyte Diblock Copolymer Micelles
    J.R.C. van der Maarel, W. Groenewegen, S.U. Egelhaaf, and A. Lapp
    Langmuir     16, 7510-7519 (2000), DOI: 10.1021/la000299z

  73. Counterion Distribution in the Coronal Layer of Polyelectrolyte Diblock Copolymer Micelles
    W. Groenewegen, A. Lapp, S.U. Egelhaaf, and J.R.C. van der Maarel
    Macromolecules     33, 4080-4086 (2000), DOI: 10.1021/ma000096h

  74. Neutron Scattering Estimates of the Effect of Charge on the Micelle Structure in Aqueous Polyelectrolyte Diblock Copolymer Solutions
    W. Groenewegen, S.U. Egelhaaf, A. Lapp, and J.R.C. van der Maarel
    Macromolecules     33, 3283-3293 (2000), DOI: 10.1021/ma992116p

  75. Multivalent Ion - DNA Interaction; Neutron Scattering Estimates of Polyamine Distribution
    S.S. Zakharova, S.U. Egelhaaf, L.B. Bhuiyan, C.W. Outhwaite, D. Bratko, and J.R.C. van der Maarel
    The Journal of Chemical Physics     111, 10706-10716 (1999), DOI: 10.1063/1.480425

  76. Effect of Spatial Inhomogeneity in Dielectric Permittivity on DNA Double Layer Formation
    J.R.C. van der Maarel
    Biophysical Journal     76, 2673-2678 (1999), DOI: 10.1016/S0006-3495(99)77419-9

  77. Structure of Short DNA Fragment Solutions
    J.R.C. van der Maarel and K. Kassapidou
    Macromolecules     31, 5734-5739 (1998), DOI: 10.1021/ma9805710

  78. Liquid Crystal Formation in DNA Fragment Solutions
    K. Kassapidou, W. Jesse, J.A.P.P. van Dijk, and J.R.C. van der Maarel
    Biopolymers     46, 31-37 (1998), DOI: 10.1002/(SICI)1097-0282(199807)46:1<31::AID-BIP3>3.0.CO;2-Z

  79. Melting of Columnar Hexagonal DNA Liquid Crystals
    K. Kassapidou and J.R.C. van der Maarel
    The European Physical Journal B     3, 471-476 (1998), DOI: 10.1007/s100510050337

  80. Structure and Charge Distribution in DNA and Poly(Styrenesulfonate) (PSS) Aqueous Solutions
    K. Kassapidou, W. Jesse, M.E. Kuil, A. Lapp, S. Egelhaaf, and J.R.C. van der Maarel
    Macromolecules     30, 2671-2684 (1997), DOI: 10.1021/ma9617126, Correction 31, 1704 (1998), DOI: 10.1021/ma981980z

  81. On the Structure and Charge Distribution in Poly(styrenesulphonate) Ion Exchange Resins
    J.R.C. van der Maarel, W. Jesse, M.E. Kuil, and A. Lapp
    Macromolecules     29, 2039-2045 (1996), DOI: 10.1021/ma00078a027

  82. Structure Functions of Rodlike DNA Fragment and Polystyrenesulfonate Solutions in the Modified Poisson-Boltzmann Theory
    L.B. Bhuiyan, C.W. Outhwaite, and J.R.C. van der Maarel
    Physica A     231, 295-303 (1996), DOI: 10.1016/0378-4371(95)00443-2

  83. Effects of Ionic Strength on the Supramolecular Structure in Liquid Crystalline Solutions of Persistent Length DNA Fragments
    K. Kassapidou, R.K. Heenan, W. Jesse, M.E. Kuil, and J.R.C. van der Maarel
    Macromolecules     28, 3230-3239 (1995), DOI: 10.1021/ma00113a027

  84. 23Na-Relaxation in Isotropic and Anisotropic Liquid-Crystalline DNA Solutions
    L.C.A. Groot, J.R.C. van der Maarel, and J.C. Leyte
    The Journal of Physical Chemistry     98, 2699-2705 (1994), DOI: 10.1021/j100061a030

  85. Partial Structure Functions of DNA Fragment Solutions; Concentration Effects
    L.C.A. Groot, M.E. Kuil, J.C. Leyte, J.R.C. van der Maarel, J.-P. Cotton, and G. Jannink
    The Journal of Physical Chemistry     98, 10167-10172 (1994), DOI: 10.1021/j100091a036

  86. Neutron Scattering Experiments on Magnetically Aligned Liquid Crystalline DNA Fragment Solutions
    L.C.A. Groot, M.E. Kuil, J.C. Leyte, J.R.C. van der Maarel, R.K. Heenan, S.M. King, and G. Jannink
    Liquid Crystals     17, 263-276 (1994), DOI: 10.1080/02678299408036565

  87. Hydration of Chloride Ions in a Polyelectrolyte Solution Studied with Neutron Diffraction
    T.W.N. Bieze, R.H. Tromp, J.R.C. van der Maarel, M.H.J.M. van Strien, M.-C. Bellissent-Funel, G.W. Neilson, and J.C. Leyte
    The Journal of Physical Chemistry     98, 4454-4458 (1994), DOI: 10.1021/j100067a036

  88. Polymer Dynamics in Aqueous Poly(Ethyleneoxide) Solutions; an NMR Study
    T.W.N. Bieze, J.R.C. van der Maarel, C.D. Eisenbach, and J.C. Leyte
    Macromolecules     27, 1355-1366 (1994), DOI: 10.1021/ma00084a013

  89. The Intramolecular OH bond length of Water in a Concentrated Poly(Ethyleneoxide) Solution; An NMR relaxation study
    T.W.N. Bieze, J.R.C. van der Maarel, and J.C. Leyte
    Chemical Physics Letters     216, 56-62 (1993), DOI: 10.1016/0009-2614(93)E1245-C

  90. On the Charge Distribution in Aqueous Poly(styrenesulfonic acid) Solutions; a Small Angle Neutron Scattering Study
    J.R.C. van der Maarel, L.C.A. Groot, J.G. Hollander, W. Jesse, M.E. Kuil, J.C. Leyte, L.H. Leyte-Zuiderweg, M. Mandel, J.-P. Cotton, G. Jannink, A. Lapp, and B. Farago
    Macromolecules     26, 7295-7299 (1993), DOI: 10.1021/ma00084a013

  91. The Relaxation Dynamics of Spin I = 1 Nuclei with a Static Quadrupolar Coupling and a Radio-Frequency Field
    J.R.C. van der Maarel
    The Journal of Chemical Physics     99, 5646-5653 (1993), DOI: 10.1063/1.465959

  92. On the Charge Structure Function of Rodlike Polyelectrolytes
    J.R.C. van der Maarel, M. Mandel, and G. Jannink
    Europhysics Letters     20, 607-612 (1992), DOI: 10.1209/0295-5075/20/7/006

  93. Partial and Charge Structure Functions of Monodisperse DNA Fragments in Salt Free Aqueous Solution
    J.R.C. van der Maarel, L.C.A. Groot, M. Mandel, W. Jesse, G. Jannink, and V. Rodriguez
    Journal de Physique II France     2, 109-122 (1992), DOI: 10.1051/jp2:1992117

  94. Counterion Dynamics in Crosslinked Poly(StyreneSulfonate) Systems Studied by NMR
    R.H. Tromp, J.R.C. van der Maarel, J. de Bleijser, and J.C. Leyte
    Biophysical Chemistry     41, 81-100 (1991), DOI: 10.1016/0301-4622(91)87212-N

  95. The Charge Structure Function in Electrolytes and Polyelectrolytes
    G. Jannink and J.R.C. van der Maarel
    Biophysical Chemistry     41, 15-22 (1991), DOI: 10.1016/0301-4622(91)87205-J

  96. Fractal Structure of a Cross-Linked Polymer Resin: A Small Angle X-ray Scattering, Pulsed Field Gradient, and Paramagnetic Relaxation Study
    C. Chachaty, J.-P. Korb, J.R.C. van der Maarel, W. Bras, and P. Quinn
    Physical Review     B 44, 4778-4793 (1991), DOI: 10.1103/PhysRevB.44.4778

  97. Relaxation of Spin Quantum Number S = 3/2 by Multiple-Pulse Quadrupolar Echoes
    J.R.C. van der Maarel
    The Journal of Chemical Physics     94, 4765-4775 (1991), DOI: 10.1063/1.460561

  98. Theory of Dipolar Relaxation in Lamellar System: Application to Lyotropic Liquid Crystals
    J.-P. Korb, Th. Bredel, C. Chachaty, and J.R.C. van der Maarel
    The Journal of Chemical Physics     93, 1964-1972 (1990), DOI: 10.1063/1.459074

  99. Spin S = 3/2 T1rho Relaxation; the Excitation of Triple-Quantum Coherences
    J.R.C. van der Maarel, R.H. Tromp, J.C. Leyte, J.G. Hollander, and C. Erkelens
    Chemical Physics Letters     169, 585-590 (1990), DOI: 10.1016/0009-2614(90)85652-S

  100. Probing the Microstructure of Liquid Crystalline Surfactant Systems; a Physico-Chemical Study Using Rheometry, DTA, and 17O NMR
    H.L.G.M. Tiemessen, J.R.C. van der Maarel, H.E. Bodde, H. Jousma, and H.E. Junginger
    Journal of Controlled Release     13, 73-81 (1990), DOI: 10.1016/0168-3659(90)90076-6

  101. Intramolecular O-H Bond Length and Quadrupole Coupling Constants of Water in Polyelectrolyte Solutions; A Nuclear Magnetic Relaxation Study
    J.R.C. van der Maarel, A.K. Jawahier, and J.C. Leyte
    Macromolecules     23, 959-963 (1990), DOI: 10.1021/ma00206a011

  102. Relaxation of Spin S = 3/2 in the Doubly Rotating Tilted Frame
    J.R.C. van der Maarel
    The Journal of Chemical Physics     91, 1446-1450 (1989), DOI: 10.1063/1.457629

  103. On the Structure and Dynamics of Lithium Counterions in Polyelectrolyte Solutions; A Nuclear Magnetic Resonance and Neutron Scattering Study
    J.R.C. van der Maarel, D.H. Powell, A.K. Jawahier, L.H. Leyte-Zuiderweg, G.W. Neilson, and M.-C. Bellissent-Funel
    The Journal of Chemical Physics 90, 6709-6715 (1989), DOI: 10.1063/1.456290

  104. Relaxation of Spin S = 3/2 in a Nonzero Average Electric Field Gradient
    J.R.C. van der Maarel
    Chemical Physics Letters     155, 288-296 (1989), DOI: 10.1016/0009-2614(89)85327-8

  105. A H, D, and 17O Nuclear Magnetic Relaxation Study on the Structure and Dynamics of Water in Concentrated ZnCl2
    J.R.C. van der Maarel
    Journal of Magnetic Resonance     81, 92-103 (1989), DOI: 10.1016/0022-2364(89)90269-2

  106. Water and Aluminum Self-Diffusion in Aqueous AlCl3 Solutions
    J.R.C. van der Maarel and J. de Bleijser
    Chemical Physics Letters     141, 251-254 (1987), DOI: 10.1016/0009-2614(87)85019-4

  107. Water Dynamics in Polyelectrolyte Solutions from Deuterium and Oxygen-17 Nuclear Magnetic Relaxation
    J.R.C. van der Maarel, D. Lankhorst, J. de Bleijser, and J.C. Leyte
    Macromolecules     20, 2390-2397 (1987), DOI: 10.1021/ma00176a011

  108. On the Structure and Dynamics of Water in AlCl3 Solutions from H, 17O, and 27Al Nuclear Magnetic Relaxation
    J.R.C. van der Maarel, H.R.W.M. de Boer, J. de Bleijser, D. Bedeaux, and J.C. Leyte
    The Journal of Chemical Physics     86, 3373-3379 (1987), DOI: 10.1063/1.451995

  109. Cryptate 13C and 23Na Nuclear Magnetic Relaxation as a Probe of Counterion Dynamics in Aqueous Polyacrylate Solutions
    J.R.C. van der Maarel, D. van Duijn, J. de Bleijser, and J.C. Leyte
    Chemical Physics Letters     135, 62-66 (1987), DOI: 10.1016/0009-2614(87)87217-2

  110. Water Dynamics in Aqueous Electrolyte Solutions from Proton, Deuterium, and Oxygen-17 Nuclear Magnetic Relaxation
    J.R.C. van der Maarel, D. Lankhorst, J. de Bleijser, and J.C. Leyte
    The Journal of Physical Chemistry     90, 1470-1478 (1986), DOI: 10.1021/j100398a050

  111. On the Single-Molecule Dynamics of Water from Proton, Deuterium, and Oxygen-17 Nuclear Magnetic Relaxation
    J.R.C. van der Maarel, D. Lankhorst, J. de Bleijser, and J.C. Leyte
    Chemical Physics Letters     122, 541-544 (1985), DOI: 10.1016/0009-2614(85)87265-1

Books

  1. Introduction to Biopolymer Physics
    J.R.C. van der Maarel
    World Scientific, Singapore (2008), DOI: 10.1142/6644}{10.1142/6644

  2. Magnetic Relaxation Study on the Structure and Dynamics of Water
    J. R. C. van der Maarel
    Dissertation, Kanters, Alblasserdam (1987)

Book chapters

  1. Probing Amyloid-DNA Interaction with Nanofluidics
    R. Basak, I. Yadav, V. Arluison, J. A. van Kan, and J. R. C. van der Maarel
    Methods in Molecular Biology 2538, Bacterial Amyloids (Eds. V. Arluison, F. Wien, and A. Marcoleta, Humana, New York, 2022), 305--317, DOI: 10.1007/978-1-0716-2529-3_20

  2. Polyelectrolyte Diblock Copolymer Micelles; Small Angle Scattering Estimates of the Charge Ordering in the Coronal Layer
     J.R.C. van der Maarel
    Nanoscience and technology, Nanostructured Soft Matter: Experiment, Theory, Simulation, and Perspectives (Ed. A.V. Zvelindovsky, Springer-Verlag, Berlin, 2007), 129-158, DOI: 10.1007/978-1-4020-6330-5-4

  3. Charge Structure in Electrolytes and Polyelectrolytes. Experimental Evidence and Interpretation
    G. Jannink, W. Kunz, J.R.C. van der Maarel, P. Calmettes, and J.-P. Cotton
    Lecture Notes in Physics     415, Complex Fluids (Ed. L. Garrido, Springer, Berlin, 1993), 41-55, DOI: 10.1007/3540563962-62

Conference proceedings, extended abstracts, and other contributions

  1. Spherical Polyelectrolyte Brushes
     J.R.C. van der Maarel
    Highlights of the Institute Max von Laue - Paul Langevin, Topical Brochure on Neutrons and Soft Matter, 2005

  2. Plectonemic Structure of Topologically Constrained Supercoiled DNA
    J.R.C. van der Maarel, S.S. Zakharova, W. Jesse, C. Backendorf, S.U. Egelhaaf, and A. Lapp
     Laboratoire Leon Brillouin, Scientific Report 2001-2002 and The Orange Book, Dutch Neutron and Muon Science 2000-2003

  3. Polymer Gel Barriers for Contaminant Containment
    M.I.M. Darwish, P.L.J. Zitha, J.R.C. van der Maarel, L. Pel, and H. Huinink
    Environmental Geotechnics, Proceedings of the 4th International Congress, (Eds. L.G. de Mello and M. Almeida, Balkema, Rotterdam, 2002), 77-82

  4. Polymer Gel Barriers for Waste Disposal Facilities
    M.I.M. Darwish, P.L.J. Zitha, J.R.C. van der Maarel, L. Pel, and H. Huinink
    Geotechnical Engineering - Meeting Society's Needs. Proceedings of the 14th Southeast Asian Geotechnical Conference, (Eds. K.K. S. Ho and K.S. Li, Balkema, Rotterdam, 2001), 225-230

  5. In Vivo Triple-Quantum-Filtered Sodium MRI: Signal Dependence on the RF Pulse-Widths
     I. Hancu, J.R.C. van der Maarel, G.X. Shen, and F.E. Boada
    Proceedings International Society for Magnetic Resonance in Medicine     8, 1738 (2000)

  6. Theory of Dipolar Relaxation in Lamellar Systems: Application to Lyotropic Mesophases
     J.-P. Korb, Th. Bredel, C. Chachaty, and J.R.C. van der Maarel
    Congress Ampere on Magnetic Resonance and Related Phenomena, 25th: Extended Abstracts Stuttgart, 1990 (Eds. M. Mehring, J.U. von Schutz, and H.C. Wolf, Springer-Verlag, New York, 1991), 310-311, DOI: 10.1007/978-3-642-76072-3_160

  7. Fractal Structure of a Cross-Linked Polymer resin: A Pulsed Field Gradient, Paramagnetic Relaxation and Small Angle X-ray Scattering Study
     C. Chachaty, J.-P. Korb, and J.R.C. van der Maarel
    Congress Ampere on Magnetic Resonance and Related Phenomena, 25th: Extended Abstracts Stuttgart, 1990 (Eds. M. Mehring, J.U. von Schutz, and H.C. Wolf, Springer-Verlag, New York, 1991), 325-326, DOI: 10.1007/978-3-642-76072-3_168

  8. Quadrupolar Echo Train Relaxation of Spin S = 3/2 Nuclei
     J.R.C. van der Maarel
    Congress Ampere on Magnetic Resonance and Related Phenomena, 25th: Extended Abstracts Stuttgart, 1990 (Eds. M. Mehring, J.U. von Schutz, and H.C. Wolf, Springer-Verlag, New York, 1991), 430-431, DOI: 10.1007/978-3-642-76072-3_223

  9. How to Cope with Dielectric Heating
     J.R.C. van der Maarel, J. Jansen, G. van Kampenhout, and C. Erkelens
    TAMU NMR Newsletter 385, 32 (1990).

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